Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs13422024 chr2:30811554 T/C 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs13424441 chr2:30691569 C/T 1.29E-8 119 37.37 50.07 33.13 KM Plot
THYM rs13426316 chr2:30670010 G/A 7.61E-14 117 38.58 45.87 12.93 KM Plot
THYM rs13427862 chr2:30824396 A/G 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs13428342 chr2:30824819 A/T 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs13429922 chr2:30648108 T/A 0 116 37.27 50.47 12.63 KM Plot
THYM rs13430515 chr2:30689710 A/G 1.29E-8 119 37.37 50.07 33.13 KM Plot
THYM rs13430622 chr2:30689782 A/G 1.29E-8 119 37.37 50.07 33.13 KM Plot
THYM rs13430781 chr2:30841526 G/A 1.54E-8 118 36.03 50.1 33.13 KM Plot
THYM rs13432085 chr2:30754799 T/C 2.24E-8 117 36.03 50.07 33.13 KM Plot
THYM rs1355815 chr1:227359271 C/T 0.000123 119 19.63 37.13 42.82 KM Plot
THYM rs1373263 chr2:80546439 T/G 1.05E-6 118 42.73 38.13 9.72 KM Plot
THYM rs137870909 chr7:29730317 G/A 3.55E-13 119 37.63 48.18 6 KM Plot
THYM rs137925600 chr3:9838758 CAT/C 2.16E-6 114 36.4 52.58 25.83 KM Plot
THYM rs138002869 chr18:33615278 C/CAG 0.000136 119 49.4 35 51.23 KM Plot